Alignment of alleles: Charr (Salvelinus alpinus) IGHV5S3

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 G   Q   T   L   T   E   S   G   P       V   V   K   T   P   G   E   S   H   K
  AJ000364,IGHV5S3*01           GGT CAG ACA CTG ACT GAG TCT GGA CCA ... GTG GTT AAA ACA CCT GGA GAA TCC CAC AAA

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   T   C   T   A   S   G   F   T   F   S   S   Y   W                   M   A
  AJ000364,IGHV5S3*01           CTG ACC TGT ACA GCT TCT GGG TTC ACT TTC AGT AGC TAC TGG ... ... ... ... ATG GCT

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   I   R   Q   A   P   G   K   G   L   E   W   I   A   Y   S   H   S   T   T
  AJ000364,IGHV5S3*01           TGG ATC AGA CAG GCT CCT GGG AAA GGA CTG GAG TGG ATA GCT TAT AGT CAT AGC ACT ACT

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 A                   Y   Y   S   Q   S   F   Q       G   R   F   T   I   S   R
  AJ000364,IGHV5S3*01           GCT ... ... ... ... TAC TAC TCC CAG TCA TTT CAG ... GGT AGA TTC ACC ATC TCC AGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   D   S   S   S   K   L   Y   L   Q   M   N   S   L   K   S   E   D   T   A
  AJ000364,IGHV5S3*01           GAT GAC TCC AGC AGT AAG CTG TAC CTA CAG ATG AAC AGC CTG AAG AGT GAG GAC ACA GCA

                                                CDR3-IMGT
                                101 102 103 104 105 106
                                 V   Y   Y   C   A   R
  AJ000364,IGHV5S3*01           GTG TAT TAC TGT GCT AGA  #c
#c: rearranged cDNA

This alignement has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 03/07/2003
Author: Nathalie Bosc